Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PAAD | rs73671034 | chr8:1860394 | C/T | 0 | 172 | 15.33 | 13.8 | 0.4 | KM Plot |
| PAAD | rs73790077 | chr6:170039713 | A/G | 3.5E-11 | 176 | 15.57 | 15.53 | 3.55 | KM Plot |
| PAAD | rs73790078 | chr6:170040210 | G/A | 2.53E-11 | 178 | 15.57 | 15.43 | 3.55 | KM Plot |
| PAAD | rs73964010 | chr2:146093014 | G/A | 9.29E-8 | 178 | 15.67 | 14.18 | 3.17 | KM Plot |
| PAAD | rs73981616 | chr17:12904992 | G/A | 3.49E-6 | 177 | 16.05 | 15.47 | 7.77 | KM Plot |
| PAAD | rs7398573 | chr12:53276029 | A/G | 0 | 176 | 15.62 | 13.47 | 1.03 | KM Plot |
| PAAD | rs74319334 | chr1:200521442 | T/A | 0 | 170 | 15.23 | 16.13 | 1.03 | KM Plot |
| PAAD | rs74361359 | chr11:125704202 | C/G | 5.8E-5 | 178 | 15.95 | 12.2 | 4.1 | KM Plot |
| PAAD | rs74362220 | chr1:26191665 | A/AAC | 1.39E-7 | 174 | 3.17 | 15.77 | 15.48 | KM Plot |
| PAAD | rs7437490 | chr4:2404083 | T/C | 0 | 178 | 0.4 | 16.1 | 15.37 | KM Plot |
| PAAD | rs74386349 | chr7:102833677 | A/G | 7.17E-10 | 171 | 16.28 | 12.2 | 4.1 | KM Plot |
| PAAD | rs74398455 | chr2:128498044 | G/A | 7.9E-10 | 178 | 15.62 | 12.6 | 2.2 | KM Plot |
| PAAD | rs7440564 | chr4:2384014 | T/C | 0 | 175 | 0.4 | 16.07 | 15.42 | KM Plot |
| PAAD | rs74408498 | chr12:130866754 | C/T | 2.33E-5 | 176 | 15.33 | 19.58 | 4.27 | KM Plot |
| PAAD | rs74433506 | chr1:227426502 | T/C | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |